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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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W
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Z
A
AbInitioModel (class in modelcif.model)
AlignedPositionsIdentity (class in modelcif.alignment)
Alignment (class in modelcif.reference)
AlignmentMode (class in modelcif.alignment)
alignments (modelcif.reference.TargetReference attribute)
(modelcif.System attribute)
AlignmentType (class in modelcif.alignment)
AlphaFoldDB (class in modelcif.reference)
Assembly (class in modelcif)
AsymUnit (class in modelcif)
AsymUnitRange (class in modelcif)
Atom (class in modelcif.model)
atom() (modelcif.Residue method)
auth_seq_id (modelcif.Residue property)
authors (modelcif.System attribute)
B
BLASTEValue (class in modelcif.alignment)
branch_descriptors (modelcif.Entity attribute)
branch_links (modelcif.Entity attribute)
C
CanonicalSMILES (class in modelcif.descriptor)
CIFFile (class in modelcif.associated)
citations (modelcif.System attribute)
comments (modelcif.System attribute)
comp (modelcif.Residue property)
ContactProbability (class in modelcif.qa_metric)
D
Data (class in modelcif.data)
Database (class in modelcif)
DataGroup (class in modelcif.data)
description (modelcif.qa_metric.MetricMode property)
Descriptor (class in modelcif.descriptor)
Distance (class in modelcif.qa_metric)
E
Energy (class in modelcif.qa_metric)
Entity (class in modelcif)
F
File (class in modelcif.associated)
file_format (modelcif.associated.CIFFile property)
formula_weight (modelcif.Entity property)
G
get_atoms() (modelcif.model.Model method)
get_url() (modelcif.associated.Repository method)
Global (class in modelcif.alignment)
(class in modelcif.qa_metric)
grants (modelcif.System attribute)
H
HHblitsEValue (class in modelcif.alignment)
HomologyModel (class in modelcif.model)
I
Identity (class in modelcif.alignment)
InChI (class in modelcif.descriptor)
InChIKey (class in modelcif.descriptor)
ins_code (modelcif.Residue property)
IpTM (class in modelcif.qa_metric)
is_branched() (modelcif.Entity method)
is_polymeric() (modelcif.Entity method)
IsomericSMILES (class in modelcif.descriptor)
IUPACName (class in modelcif.descriptor)
L
Local (class in modelcif.qa_metric)
LocalPairwise (class in modelcif.qa_metric)
LocalPairwiseQAScoresFile (class in modelcif.associated)
M
MetricMode (class in modelcif.qa_metric)
MetricType (class in modelcif.qa_metric)
Model (class in modelcif.model)
model_groups (modelcif.System attribute)
modelcif
module
modelcif.alignment
module
modelcif.associated
module
modelcif.data
module
modelcif.descriptor
module
modelcif.dumper
module
modelcif.model
module
modelcif.protocol
module
modelcif.qa_metric
module
modelcif.reader
module
modelcif.reference
module
ModelCIFVariant (class in modelcif.dumper)
(class in modelcif.reader)
ModelGroup (class in modelcif.model)
ModelingStep (class in modelcif.protocol)
ModelSelectionStep (class in modelcif.protocol)
module
modelcif
modelcif.alignment
modelcif.associated
modelcif.data
modelcif.descriptor
modelcif.dumper
modelcif.model
modelcif.protocol
modelcif.qa_metric
modelcif.reader
modelcif.reference
N
name (modelcif.qa_metric.MetricMode property)
NonPolymerFromTemplate (class in modelcif)
NormalizedScore (class in modelcif.qa_metric)
num_map (modelcif.AsymUnit attribute)
O
other_details (modelcif.alignment.Identity property)
(modelcif.model.Model property)
(modelcif.qa_metric.MetricType property)
(modelcif.reference.TargetReference property)
(modelcif.reference.TemplateReference property)
P
PAE (class in modelcif.qa_metric)
Pair (class in modelcif.alignment)
Pairwise (class in modelcif.alignment)
parent (modelcif.Assembly attribute)
PDB (class in modelcif.reference)
PLDDT (class in modelcif.qa_metric)
Protocol (class in modelcif.protocol)
protocols (modelcif.System attribute)
PTM (class in modelcif.qa_metric)
PubChem (class in modelcif.reference)
PubChemCID (class in modelcif.descriptor)
Q
qa_metrics (modelcif.model.Model attribute)
R
read() (in module modelcif.reader)
ReferenceDatabase (class in modelcif)
repositories (modelcif.System attribute)
Repository (class in modelcif.associated)
Residue (class in modelcif)
residue() (modelcif.AsymUnit method)
(modelcif.Entity method)
S
Score (class in modelcif.alignment)
segment() (modelcif.AsymUnit method)
(modelcif.Template method)
seq_id_range (modelcif.AsymUnit property)
(modelcif.Entity property)
(modelcif.Template property)
SeqDif (class in modelcif.reference)
sequence (modelcif.AsymUnit property)
ShorterSequenceIdentity (class in modelcif.alignment)
Software (class in modelcif)
SoftwareGroup (class in modelcif)
SoftwareParameter (class in modelcif)
SoftwareWithParameters (class in modelcif)
Step (class in modelcif.protocol)
steps (modelcif.protocol.Protocol attribute)
strand_id (modelcif.AsymUnit property)
(modelcif.Template property)
System (class in modelcif)
T
TargetReference (class in modelcif.reference)
Template (class in modelcif)
TemplateReference (class in modelcif.reference)
TemplateSearchStep (class in modelcif.protocol)
TemplateSegment (class in modelcif)
Transformation (class in modelcif)
U
UniProt (class in modelcif.reference)
W
write() (in module modelcif.dumper)
Z
ZipFile (class in modelcif.associated)
ZScore (class in modelcif.qa_metric)
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