.. highlight:: rest

.. _alignment_module:

The :mod:`modelcif.alignment` Python module
===========================================

.. automodule:: modelcif.alignment

.. autoclass:: Identity
   :members:

.. autoclass:: ShorterSequenceIdentity

.. autoclass:: AlignedPositionsIdentity

.. autoclass:: AlignedResiduePairsIdentity

.. autoclass:: MeanSequenceIdentity

.. autoclass:: Pair
   :members:

.. autoclass:: AlignmentMode
   :members:

.. autoclass:: Global
   :members:

.. autoclass:: Local
   :members:

.. autoclass:: AlignmentType
   :members:

.. autoclass:: Pairwise
   :members:

.. autoclass:: Multiple
   :members:

.. autoclass:: Score
   :members:

.. autoclass:: BLASTEValue
   :members:

.. autoclass:: HHblitsEValue
   :members: